Final version of degree project report
The last administrative details of my thesis project are now finished, and the report is now available in final form, for download as PDF in on this page (no 14 in the list), or this direct link. (The...
View ArticleAutumn is here - new projects starting
Now that the autumn is here I have some new projects starting, and running for approximately this month (before jumping out into the real world and trying to get a real job :) ). Good thing is, it all...
View ArticleEditing Semantic MediaWiki from Bioclipse (with Screencast)
The original use case behind the RDFIOSemantic MediaWiki Extension which I developed as part of "Google Summer of Code 2010", and which was to hook up SMW with Bioclipse, is now concretizising. By...
View ArticleLooping over a List in Bioclipse's JS console
I had some trouble finding out how to loop over the results of a manager method in Bioclipse, which returns a List<String> to Bioclipse's javascript console. Since I didn't find it documented...
View ArticleA graphical client for running bioinformatics tools on HPC clusters
This blog has been silent for a while and someone might wonder what I've been doing.One answer is: Developing a graphical client for non-linux-experienced users to connect securely to a computer...
View ArticleOpening a remote file selection dialog with the RSE for Eclipse
This was easier than expected. Helped by the RSE File UI API Docs and this forum post, I figured out how to do:SystemRemoteFileDialog dialog =new...
View ArticleGot "select remote file" to work in the Cluster Job Config Wizard
As hinted about in this blog post, I'm working on a cluster batch job configuration wizard for Bioclipse, making heavy use of the TM / RSE components for Eclipse.In the wizard, I of course wanted to be...
View ArticleFIMS Project Status update - Thinking about CLI wrapper XML formats
Time for a little more "overview" like status update of the BioclipseHPC Client part of the FIMS Project I'm working on for UPPNEX at UPPMAX.Right now I'm hacking away on the batch job config wizard...
View ArticleHPC Client Screencast: Experimental Job Config Wizard
My work at UPPMAX, on the Bioclipse based HPC Client i is progressing, slowly but steadily. I just screencasted an experimental version of the job configuration wizard, which loads command line tool...
View ArticleMy SMWCon Fall 2011 Talk
After doing my GSoC project for Wikimedia foundation / Semantic MediaWiki in 2010, resulting in the RDFIO Extension, I finally could make it to the Semantic MediaWiki Conference, which was in Berlin...
View ArticleMy SMWCon Fall 2011 Talk now on YouTube
I blogged it earlier, but better to get everything in one post, so taking the summary again:After doing my GSoC project for Wikimedia foundation / Semantic MediaWiki in 2010, resulting in the RDFIO...
View ArticleNew Google+ communities: Bioclipse, Cheminformatics, Semantic MediaWiki
After spending countless hours on Google+, I have realized how useful their new group feature is, for sharing/finding interesting stuff happening around different technologies. It's nice handling of...
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